Dca42775.1
Annotation
- 2-exons
- f-1
- sp|Q2R3T2_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g30860#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
- Repeat List (scaffold4824)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42775.1 |
3 |
647 |
670 |
44.02 |
645 |
44 |
8e-144
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R3T2_ORYSJ |
16 |
678 |
879 |
75.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42775.1 |
354 |
646 |
670 |
21.34 |
293 |
49 |
8e-80
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
561 |
848 |
1539 |
18.71 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4824 |
Augustus |
mRNA |
14566 |
17064 |
. |
+ |
. |
ID=Dca42775.1;Parent=Dca42775 |
| scaffold4824 |
Augustus |
exon |
14566 |
15619 |
. |
+ |
. |
ID=Dca42775.1.exon1;Parent=Dca42775.1 |
| scaffold4824 |
Augustus |
exon |
16106 |
17064 |
. |
+ |
. |
ID=Dca42775.1.exon2;Parent=Dca42775.1 |
