Carnation DB

Dca43016.1

Annotation

7-exons
f-1
sp|A5BQE9_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_038920#unknown#0F0P0C
AT1G13220.2 | Symbols: LINC2 | nuclear matrix constituent protein-related | chr1:4515699-4520071 FORWARD LENGTH=1128
Repeat List (scaffold487)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43016.1	10	1229	1229	43.28	1220	42	0
Target_name	Start	End	Length	Cov(%)
sp\|A5BQE9_VITVI	27	1234	1234	97.89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43016.1	11	1099	1229	32.95	1089	37	4e-169
Target_name	Start	End	Length	Cov(%)
AT1G13220.2	2	1007	1128	89.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold487	Augustus	mRNA	115218	123567	.	+	.	ID=Dca43016.1;Parent=Dca43016
scaffold487	Augustus	exon	115218	115520	.	+	.	ID=Dca43016.1.exon1;Parent=Dca43016.1
scaffold487	Augustus	exon	117069	117350	.	+	.	ID=Dca43016.1.exon2;Parent=Dca43016.1
scaffold487	Augustus	exon	118726	118979	.	+	.	ID=Dca43016.1.exon3;Parent=Dca43016.1
scaffold487	Augustus	exon	119116	119386	.	+	.	ID=Dca43016.1.exon4;Parent=Dca43016.1
scaffold487	Augustus	exon	119471	119554	.	+	.	ID=Dca43016.1.exon5;Parent=Dca43016.1
scaffold487	Augustus	exon	120394	122489	.	+	.	ID=Dca43016.1.exon6;Parent=Dca43016.1
scaffold487	Augus-PASA	exon	123168	123567	.	+	.	ID=Dca43016.1.exon7;Parent=Dca43016.1