Carnation DB

Dca44887.1

Annotation

13-exons
f-1
sp|B9N1A1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_597644#unknown#0F0P0C
sp|B9RQ64_RICCO#Rwd domain-containing protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1485400#unknown#0F0P0C
Repeat List (scaffold5205)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44887.1	1	288	288	64.93	288	65	2e-92
Target_name	Start	End	Length	Cov(%)
sp\|B9N1A1_POPTR	1	252	252	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44887.1	1	201	288	52.08	201	75	2e-84
Target_name	Start	End	Length	Cov(%)
AT1G51730.1	1	201	252	79.76

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5205	Augus-PASA	mRNA	2970	9246	.	-	.	ID=Dca44887.1;Parent=Dca44887
scaffold5205	Augus-PASA	exon	2970	3052	.	-	.	ID=Dca44887.1.exon1;Parent=Dca44887.1
scaffold5205	Augustus	exon	3205	3283	.	-	.	ID=Dca44887.1.exon2;Parent=Dca44887.1
scaffold5205	Augustus	exon	3721	3731	.	-	.	ID=Dca44887.1.exon3;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	3912	3990	.	-	.	ID=Dca44887.1.exon4;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	4428	4518	.	-	.	ID=Dca44887.1.exon5;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	4617	4708	.	-	.	ID=Dca44887.1.exon6;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	5070	5198	.	-	.	ID=Dca44887.1.exon7;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	5622	5679	.	-	.	ID=Dca44887.1.exon8;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	6547	6616	.	-	.	ID=Dca44887.1.exon9;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	6745	6778	.	-	.	ID=Dca44887.1.exon10;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	8515	8582	.	-	.	ID=Dca44887.1.exon11;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	8800	8865	.	-	.	ID=Dca44887.1.exon12;Parent=Dca44887.1
scaffold5205	Augus-PASA	exon	9240	9246	.	-	.	ID=Dca44887.1.exon13;Parent=Dca44887.1