Carnation DB

Dca44954.1

Annotation

9-exons
f-1
sp|B9IAZ9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1100159#GO:0033897;GO:0003723#2F0P0C
AT2G39780.1 | Symbols: RNS2 | ribonuclease 2 | chr2:16591256-16593515 FORWARD LENGTH=259
Repeat List (scaffold522)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44954.1	9	289	293	53.92	281	57	3e-90
Target_name	Start	End	Length	Cov(%)
sp\|B9IAZ9_POPTR	4	261	268	96.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44954.1	46	271	293	47.78	226	62	6e-81
Target_name	Start	End	Length	Cov(%)
AT2G39780.1	28	240	259	82.23

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold522	Augus-PASA	mRNA	89160	93927	.	+	.	ID=Dca44954.1;Parent=Dca44954
scaffold522	Augus-PASA	exon	89160	89395	.	+	.	ID=Dca44954.1.exon1;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	90621	90649	.	+	.	ID=Dca44954.1.exon2;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	90839	90912	.	+	.	ID=Dca44954.1.exon3;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	91673	91774	.	+	.	ID=Dca44954.1.exon4;Parent=Dca44954.1
scaffold522	Augustus	exon	91894	91921	.	+	.	ID=Dca44954.1.exon5;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	92461	92552	.	+	.	ID=Dca44954.1.exon6;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	92689	92850	.	+	.	ID=Dca44954.1.exon7;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	92999	93098	.	+	.	ID=Dca44954.1.exon8;Parent=Dca44954.1
scaffold522	Augus-PASA	exon	93869	93927	.	+	.	ID=Dca44954.1.exon9;Parent=Dca44954.1