Carnation DB

Dca45789.1

Annotation

5-exons
f-1
sp|A9PEU7_POPTR#Putative uncharacterized protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#unknown#GO:0005840;GO:0003723;GO:0003735;GO:0006412#2F1P1C
Os02t0259600-01 Similar to 50S ribosomal protein L21, chloroplast precursor (CL21) (CS-L7).
Repeat List (scaffold54)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45789.1	2	219	225	54.22	218	55	2e-51
Target_name	Start	End	Length	Cov(%)
sp\|A9PEU7_POPTR	8	225	225	96.88

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45789.1	105	213	225	37.33	109	78	4e-41
Target_name	Start	End	Length	Cov(%)
Os02t0259600-01	96	204	215	50.69

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold54	Augus-PASA	mRNA	293255	295005	.	-	.	ID=Dca45789.1;Parent=Dca45789
scaffold54	Augus-PASA	exon	293255	293344	.	-	.	ID=Dca45789.1.exon1;Parent=Dca45789.1
scaffold54	Augus-PASA	exon	293428	293502	.	-	.	ID=Dca45789.1.exon2;Parent=Dca45789.1
scaffold54	Augus-PASA	exon	293594	293695	.	-	.	ID=Dca45789.1.exon3;Parent=Dca45789.1
scaffold54	Augus-PASA	exon	293820	293900	.	-	.	ID=Dca45789.1.exon4;Parent=Dca45789.1
scaffold54	Augus-PASA	exon	294676	295005	.	-	.	ID=Dca45789.1.exon5;Parent=Dca45789.1