Carnation DB

Dca46016.1

Annotation

10-exons
f-1
sp|D7MJ37_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_916150#GO:0016021#0F0P1C
AT5G40780.1 | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446
Repeat List (scaffold545)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46016.1	1	51	51	49.01	51	50	1e-07
Target_name	Start	End	Length	Cov(%)
sp\|D7TAN1_VITVI	1	51	51	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46016.1	1	434	535	64.11	434	79	0
Target_name	Start	End	Length	Cov(%)
AT5G40780.1	1	428	446	95.96

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold545	Augustus	mRNA	35477	46623	.	+	.	ID=Dca46016.1;Parent=Dca46016
scaffold545	Augustus	exon	35477	35515	.	+	.	ID=Dca46016.1.exon1;Parent=Dca46016.1
scaffold545	Augustus	exon	38825	38988	.	+	.	ID=Dca46016.1.exon2;Parent=Dca46016.1
scaffold545	Augustus	exon	39393	39788	.	+	.	ID=Dca46016.1.exon3;Parent=Dca46016.1
scaffold545	Augustus	exon	40089	40482	.	+	.	ID=Dca46016.1.exon4;Parent=Dca46016.1
scaffold545	Augustus	exon	40730	40835	.	+	.	ID=Dca46016.1.exon5;Parent=Dca46016.1
scaffold545	Augustus	exon	40957	41048	.	+	.	ID=Dca46016.1.exon6;Parent=Dca46016.1
scaffold545	Augustus	exon	41138	41236	.	+	.	ID=Dca46016.1.exon7;Parent=Dca46016.1
scaffold545	Augustus	exon	45518	45616	.	+	.	ID=Dca46016.1.exon8;Parent=Dca46016.1
scaffold545	Augustus	exon	45697	45834	.	+	.	ID=Dca46016.1.exon9;Parent=Dca46016.1
scaffold545	Augustus	exon	46543	46623	.	+	.	ID=Dca46016.1.exon10;Parent=Dca46016.1