Carnation DB

Dca4643.1

Annotation

7-exons
f-3
sp|B9HM06_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_563805#unknown#0F0P0C
Os12t0102200-01 LisH dimerisation motif domain containing protein.
Repeat List (scaffold11746)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4643.1	1	209	210	84.28	209	81	1e-93
Target_name	Start	End	Length	Cov(%)
sp\|B9HM06_POPTR	44	262	263	83.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4643.1	1	199	210	68.57	199	68	5e-77
Target_name	Start	End	Length	Cov(%)
Os12t0102200-01	44	256	260	81.92

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold11746	Augustus	mRNA	1	3750	.	+	.	ID=Dca4643.1;Parent=Dca4643
scaffold11746	Augustus	exon	1	93	.	+	.	ID=Dca4643.1.exon1;Parent=Dca4643.1
scaffold11746	Augustus	exon	1560	1648	.	+	.	ID=Dca4643.1.exon2;Parent=Dca4643.1
scaffold11746	Augustus	exon	1746	1868	.	+	.	ID=Dca4643.1.exon3;Parent=Dca4643.1
scaffold11746	Augustus	exon	2359	2462	.	+	.	ID=Dca4643.1.exon4;Parent=Dca4643.1
scaffold11746	Augustus	exon	2568	2593	.	+	.	ID=Dca4643.1.exon5;Parent=Dca4643.1
scaffold11746	Augustus	exon	2708	2858	.	+	.	ID=Dca4643.1.exon6;Parent=Dca4643.1
scaffold11746	Augustus	exon	3702	3750	.	+	.	ID=Dca4643.1.exon7;Parent=Dca4643.1