Carnation DB

Dca46835.1

Annotation

7-exons
f-1
sp|B9HYN1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_887384#GO:0005198#1F0P0C
sp|D7MET3_ARALL#Vesicle-associated membrane family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_492738#GO:0005198#1F0P0C
Repeat List (scaffold563)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46835.1	27	239	240	72.91	213	83	1e-98
Target_name	Start	End	Length	Cov(%)
sp\|B9HYN1_POPTR	23	234	235	90.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca46835.1	23	239	240	68.33	217	70	7e-91
Target_name	Start	End	Length	Cov(%)
AT4G21450.3	79	313	314	74.84

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold563	Augus-PASA	mRNA	121474	124435	.	-	.	ID=Dca46835.1;Parent=Dca46835
scaffold563	Augus-PASA	exon	121474	121533	.	-	.	ID=Dca46835.1.exon1;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	121735	121854	.	-	.	ID=Dca46835.1.exon2;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	122011	122088	.	-	.	ID=Dca46835.1.exon3;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	122295	122416	.	-	.	ID=Dca46835.1.exon4;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	122523	122604	.	-	.	ID=Dca46835.1.exon5;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	122713	122783	.	-	.	ID=Dca46835.1.exon6;Parent=Dca46835.1
scaffold563	Augus-PASA	exon	124246	124435	.	-	.	ID=Dca46835.1.exon7;Parent=Dca46835.1