Dca47037.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold568)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47037.1 |
1 |
694 |
694 |
61.67 |
694 |
56 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
776 |
1548 |
1597 |
48.4 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47037.1 |
1 |
694 |
694 |
37.17 |
694 |
36 |
8e-110
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
640 |
1354 |
1401 |
51.03 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold568 |
Augustus |
mRNA |
30734 |
32888 |
. |
+ |
. |
ID=Dca47037.1;Parent=Dca47037 |
| scaffold568 |
Augustus |
exon |
30734 |
32067 |
. |
+ |
. |
ID=Dca47037.1.exon1;Parent=Dca47037.1 |
| scaffold568 |
Augustus |
exon |
32138 |
32888 |
. |
+ |
. |
ID=Dca47037.1.exon2;Parent=Dca47037.1 |
