Dca47246.1
Annotation
- 2-exons
- f-1
- sp|Q9M292_ARATH#Putative uncharacterized protein At3g44330#Arabidopsis thaliana (Mouse-ear cress)#Name=T22K7_10#GO:0005783;GO:0016021;GO:0005739;GO:0005886;GO:0009506;GO:0005774;GO:0016485;GO:0009966#0F2P6C
- AT3G44330.1 | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565
- Repeat List (scaffold572)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47246.1 |
13 |
143 |
155 |
51.61 |
131 |
61 |
2e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9M292_ARATH |
22 |
151 |
565 |
23 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47246.1 |
13 |
143 |
155 |
51.61 |
131 |
61 |
2e-37
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G44330.1 |
22 |
151 |
565 |
23 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold572 |
Augus-PASA |
mRNA |
126857 |
128851 |
. |
+ |
. |
ID=Dca47246.1;Parent=Dca47246 |
| scaffold572 |
Augus-PASA |
exon |
126857 |
127118 |
. |
+ |
. |
ID=Dca47246.1.exon1;Parent=Dca47246.1 |
| scaffold572 |
Augus-PASA |
exon |
128646 |
128851 |
. |
+ |
. |
ID=Dca47246.1.exon2;Parent=Dca47246.1 |
