Dca47389.1
Annotation
- 3-exons
- f-1
- sp|Q2R2I1_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g35740#unknown#0F0P0C
- Repeat List (scaffold5759)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47389.1 |
24 |
450 |
451 |
64.3 |
427 |
62 |
6e-157
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R2I1_ORYSJ |
592 |
1062 |
1064 |
44.26 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47389.1 |
30 |
442 |
451 |
33.7 |
413 |
31 |
9e-60
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
915 |
1420 |
1428 |
35.43 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5759 |
Augustus |
mRNA |
3748 |
5365 |
. |
+ |
. |
ID=Dca47389.1;Parent=Dca47389 |
| scaffold5759 |
Augustus |
exon |
3748 |
3964 |
. |
+ |
. |
ID=Dca47389.1.exon1;Parent=Dca47389.1 |
| scaffold5759 |
Augustus |
exon |
4054 |
4769 |
. |
+ |
. |
ID=Dca47389.1.exon2;Parent=Dca47389.1 |
| scaffold5759 |
Augustus |
exon |
4943 |
5365 |
. |
+ |
. |
ID=Dca47389.1.exon3;Parent=Dca47389.1 |
