Carnation DB

Dca47422.1

Annotation

9-exons
f-1
sp|F6HBB3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_13s0064g01190#GO:0003676;GO:0000166;GO:0006397#2F1P0C
AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:4014455-4017675 FORWARD LENGTH=638
Repeat List (scaffold5765)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47422.1	9	691	695	51.51	683	52	7e-178
Target_name	Start	End	Length	Cov(%)
sp\|F6HBB3_VITVI	12	700	700	98.42

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47422.1	9	692	695	39.85	684	40	3e-110
Target_name	Start	End	Length	Cov(%)
AT3G12640.1	12	636	638	97.96

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5765	Augus-PASA	mRNA	11399	18434	.	+	.	ID=Dca47422.1;Parent=Dca47422
scaffold5765	Augus-PASA	exon	11399	11524	.	+	.	ID=Dca47422.1.exon1;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	12019	12119	.	+	.	ID=Dca47422.1.exon2;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	12212	12572	.	+	.	ID=Dca47422.1.exon3;Parent=Dca47422.1
scaffold5765	Augustus	exon	12930	13784	.	+	.	ID=Dca47422.1.exon4;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	13882	13936	.	+	.	ID=Dca47422.1.exon5;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	14013	14074	.	+	.	ID=Dca47422.1.exon6;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	14154	14260	.	+	.	ID=Dca47422.1.exon7;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	14347	14434	.	+	.	ID=Dca47422.1.exon8;Parent=Dca47422.1
scaffold5765	Augus-PASA	exon	18102	18434	.	+	.	ID=Dca47422.1.exon9;Parent=Dca47422.1