Dca48470.1
Annotation
- 3-exons
- f-1
- sp|Q9ZVF0_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g01550#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold5987)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48470.1 |
2 |
255 |
289 |
34.94 |
254 |
35 |
1e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZVF0_ARATH |
880 |
1167 |
1449 |
19.87 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48470.1 |
133 |
277 |
289 |
19.72 |
145 |
37 |
2e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G24255.1 |
23 |
179 |
746 |
21.04 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5987 |
Augustus |
mRNA |
15111 |
17595 |
. |
+ |
. |
ID=Dca48470.1;Parent=Dca48470 |
| scaffold5987 |
Augustus |
exon |
15111 |
15501 |
. |
+ |
. |
ID=Dca48470.1.exon1;Parent=Dca48470.1 |
| scaffold5987 |
Augustus |
exon |
16014 |
16398 |
. |
+ |
. |
ID=Dca48470.1.exon2;Parent=Dca48470.1 |
| scaffold5987 |
Augustus |
exon |
17502 |
17595 |
. |
+ |
. |
ID=Dca48470.1.exon3;Parent=Dca48470.1 |
