Carnation DB

Dca48538.1

Annotation

7-exons
f-1
sp|F6H564_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0028g01220#GO:0008270#1F0P0C
sp|Q7XU45_ORYSJ#OSJNBa0088I22.8 protein#Oryza sativa subsp japonica (Rice)#Name=OSJNBa0088I22.8#GO:0008270#1F0P0C
Repeat List (scaffold6)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48538.1	37	231	234	38.88	195	46	1e-39
Target_name	Start	End	Length	Cov(%)
sp\|F6H564_VITVI	20	214	219	89.04

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48538.1	7	231	234	38.03	225	38	3e-37
Target_name	Start	End	Length	Cov(%)
Os04t0571200-01	17	249	255	91.37

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6	Augus-PASA	mRNA	175160	177209	.	-	.	ID=Dca48538.1;Parent=Dca48538
scaffold6	Augus-PASA	exon	175160	175198	.	-	.	ID=Dca48538.1.exon1;Parent=Dca48538.1
scaffold6	Augus-PASA	exon	175453	175561	.	-	.	ID=Dca48538.1.exon2;Parent=Dca48538.1
scaffold6	Augus-PASA	exon	175736	175860	.	-	.	ID=Dca48538.1.exon3;Parent=Dca48538.1
scaffold6	Augus-PASA	exon	176209	176253	.	-	.	ID=Dca48538.1.exon4;Parent=Dca48538.1
scaffold6	Augus-PASA	exon	176386	176426	.	-	.	ID=Dca48538.1.exon5;Parent=Dca48538.1
scaffold6	PASA	exon	176717	176954	.	-	.	ID=Dca48538.1.exon6;Parent=Dca48538.1
scaffold6	Augustus	exon	177102	177209	.	-	.	ID=Dca48538.1.exon7;Parent=Dca48538.1