Carnation DB

Dca48625.1

Annotation

12-exons
f-1
sp|D7UDA3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0122g01280#GO:0016021;GO:0008158;GO:0030301#1F1P1C
AT4G38350.2 | Symbols: | Patched family protein | chr4:17958324-17966846 REVERSE LENGTH=1297
Repeat List (scaffold6)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48625.1	32	336	338	67.45	305	75	2e-131
Target_name	Start	End	Length	Cov(%)
sp\|D7UDA3_VITVI	935	1240	1242	24.63

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48625.1	32	320	338	62.42	289	74	7e-126
Target_name	Start	End	Length	Cov(%)
AT4G38350.2	990	1277	1297	22.2

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6	Augustus	mRNA	850925	853702	.	+	.	ID=Dca48625.1;Parent=Dca48625
scaffold6	Augustus	exon	850925	851077	.	+	.	ID=Dca48625.1.exon1;Parent=Dca48625.1
scaffold6	Augustus	exon	851216	851360	.	+	.	ID=Dca48625.1.exon2;Parent=Dca48625.1
scaffold6	Augustus	exon	851470	851534	.	+	.	ID=Dca48625.1.exon3;Parent=Dca48625.1
scaffold6	Augustus	exon	851642	851707	.	+	.	ID=Dca48625.1.exon4;Parent=Dca48625.1
scaffold6	Augustus	exon	851845	851938	.	+	.	ID=Dca48625.1.exon5;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	852322	852358	.	+	.	ID=Dca48625.1.exon6;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	852482	852539	.	+	.	ID=Dca48625.1.exon7;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	852692	852802	.	+	.	ID=Dca48625.1.exon8;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	852894	852961	.	+	.	ID=Dca48625.1.exon9;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	853158	853224	.	+	.	ID=Dca48625.1.exon10;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	853311	853379	.	+	.	ID=Dca48625.1.exon11;Parent=Dca48625.1
scaffold6	Augus-PASA	exon	853619	853702	.	+	.	ID=Dca48625.1.exon12;Parent=Dca48625.1