Dca48919.1
Annotation
- 4-exons
- f-1
- sp|A5B919_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_002640#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold607)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48919.1 |
44 |
304 |
364 |
29.94 |
261 |
41 |
4e-51
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5B919_VITVI |
19 |
275 |
1450 |
17.72 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48919.1 |
40 |
251 |
364 |
19.23 |
212 |
32 |
3e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
12 |
229 |
237 |
91.98 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold607 |
Augustus |
mRNA |
153045 |
162640 |
. |
- |
. |
ID=Dca48919.1;Parent=Dca48919 |
| scaffold607 |
Augustus |
exon |
153045 |
153079 |
. |
- |
. |
ID=Dca48919.1.exon1;Parent=Dca48919.1 |
| scaffold607 |
Augustus |
exon |
153331 |
153474 |
. |
- |
. |
ID=Dca48919.1.exon2;Parent=Dca48919.1 |
| scaffold607 |
Augustus |
exon |
153588 |
154401 |
. |
- |
. |
ID=Dca48919.1.exon3;Parent=Dca48919.1 |
| scaffold607 |
Augustus |
exon |
162539 |
162640 |
. |
- |
. |
ID=Dca48919.1.exon4;Parent=Dca48919.1 |
