Carnation DB

Dca5016.1

Annotation

5-exons
f-1
sp|Q9FIC5_ARATH#Retroelement pol polyprotein-like#Arabidopsis thaliana (Mouse-ear cress)#unknown#GO:0003676;GO:0015074#1F1P0C
Repeat List (scaffold1191)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5016.1	124	1009	1010	47.52	886	53	0
Target_name	Start	End	Length	Cov(%)
sp\|Q9FIC5_ARATH	541	1447	1462	62.03

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5016.1	183	1000	1010	29.9	818	37	1e-146
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	599	1389	1401	56.45

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1191	Augustus	mRNA	51412	55997	.	-	.	ID=Dca5016.1;Parent=Dca5016
scaffold1191	Augustus	exon	51412	52964	.	-	.	ID=Dca5016.1.exon1;Parent=Dca5016.1
scaffold1191	Augustus	exon	53037	53967	.	-	.	ID=Dca5016.1.exon2;Parent=Dca5016.1
scaffold1191	Augustus	exon	54223	54435	.	-	.	ID=Dca5016.1.exon3;Parent=Dca5016.1
scaffold1191	Augustus	exon	54676	54957	.	-	.	ID=Dca5016.1.exon4;Parent=Dca5016.1
scaffold1191	Augustus	exon	55944	55997	.	-	.	ID=Dca5016.1.exon5;Parent=Dca5016.1