Dca50507.1
Annotation
- 4-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold642)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50507.1 |
37 |
363 |
363 |
33.33 |
327 |
30 |
6e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
85 |
478 |
1050 |
37.52 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50507.1 |
270 |
353 |
363 |
9.36 |
84 |
40 |
4e-13
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
647 |
731 |
1428 |
5.95 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold642 |
Augustus |
mRNA |
79672 |
81696 |
. |
- |
. |
ID=Dca50507.1;Parent=Dca50507 |
| scaffold642 |
Augustus |
exon |
79672 |
79912 |
. |
- |
. |
ID=Dca50507.1.exon1;Parent=Dca50507.1 |
| scaffold642 |
Augustus |
exon |
80644 |
80674 |
. |
- |
. |
ID=Dca50507.1.exon2;Parent=Dca50507.1 |
| scaffold642 |
Augustus |
exon |
80776 |
81268 |
. |
- |
. |
ID=Dca50507.1.exon3;Parent=Dca50507.1 |
| scaffold642 |
Augustus |
exon |
81370 |
81696 |
. |
- |
. |
ID=Dca50507.1.exon4;Parent=Dca50507.1 |
