Carnation DB

Dca5139.1

Annotation

6-exons
f-3
sp|F6I4H3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_14s0060g00430#unknown#0F0P0C
Os05t0135900-01 Spectrin repeat containing protein.
Repeat List (scaffold11977)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5139.1	2	157	409	24.93	156	66	6e-40
Target_name	Start	End	Length	Cov(%)
sp\|F6I4H3_VITVI	88	242	355	43.66

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5139.1	2	157	409	20.78	156	55	3e-38
Target_name	Start	End	Length	Cov(%)
AT5G26770.2	68	222	335	46.26

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold11977	Augustus	mRNA	1	5598	.	+	.	ID=Dca5139.1;Parent=Dca5139
scaffold11977	Augustus	exon	1	80	.	+	.	ID=Dca5139.1.exon1;Parent=Dca5139.1
scaffold11977	Augustus	exon	2041	2370	.	+	.	ID=Dca5139.1.exon2;Parent=Dca5139.1
scaffold11977	Augustus	exon	2495	2584	.	+	.	ID=Dca5139.1.exon3;Parent=Dca5139.1
scaffold11977	Augustus	exon	4628	5089	.	+	.	ID=Dca5139.1.exon4;Parent=Dca5139.1
scaffold11977	Augustus	exon	5203	5304	.	+	.	ID=Dca5139.1.exon5;Parent=Dca5139.1
scaffold11977	Augustus	exon	5431	5598	.	+	.	ID=Dca5139.1.exon6;Parent=Dca5139.1