Dca52168.1
Annotation
- 4-exons
- f-1
- sp|B9IPY1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_665539#GO:0003677;GO:0003700;GO:0016987;GO:0006352#3F1P0C
- AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502
- Repeat List (scaffold684)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52168.1 |
42 |
163 |
163 |
54.6 |
122 |
73 |
5e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9IPY1_POPTR |
388 |
509 |
509 |
23.96 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52168.1 |
42 |
163 |
163 |
51.53 |
122 |
69 |
8e-45
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G64860.1 |
381 |
502 |
502 |
24.3 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold684 |
Augustus |
mRNA |
3593 |
4666 |
. |
+ |
. |
ID=Dca52168.1;Parent=Dca52168 |
| scaffold684 |
Augustus |
exon |
3593 |
3799 |
. |
+ |
. |
ID=Dca52168.1.exon1;Parent=Dca52168.1 |
| scaffold684 |
Augustus |
exon |
3941 |
4003 |
. |
+ |
. |
ID=Dca52168.1.exon2;Parent=Dca52168.1 |
| scaffold684 |
Augustus |
exon |
4144 |
4256 |
. |
+ |
. |
ID=Dca52168.1.exon3;Parent=Dca52168.1 |
| scaffold684 |
Augustus |
exon |
4558 |
4666 |
. |
+ |
. |
ID=Dca52168.1.exon4;Parent=Dca52168.1 |
