Carnation DB

Dca5236.1

Annotation

6-exons
f-1
sp|G5DWH9_SILLA#Putative uncharacterized protein#Silene latifolia (White campion) (Bladder campion)#unknown#unknown#0F0P0C
AT5G65490.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26178003-26180309 REVERSE LENGTH=643
Repeat List (scaffold12)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5236.1	8	644	655	69.61	637	72	0
Target_name	Start	End	Length	Cov(%)
sp\|G5DWH9_SILLA	3	630	633	99.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5236.1	17	643	655	59.69	627	62	0
Target_name	Start	End	Length	Cov(%)
AT5G65490.1	15	638	643	97.04

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augustus	mRNA	458335	462140	.	-	.	ID=Dca5236.1;Parent=Dca5236
scaffold12	Augustus	exon	458335	458538	.	-	.	ID=Dca5236.1.exon1;Parent=Dca5236.1
scaffold12	Augustus	exon	458778	458947	.	-	.	ID=Dca5236.1.exon2;Parent=Dca5236.1
scaffold12	Augustus	exon	459182	459309	.	-	.	ID=Dca5236.1.exon3;Parent=Dca5236.1
scaffold12	Augustus	exon	459434	459772	.	-	.	ID=Dca5236.1.exon4;Parent=Dca5236.1
scaffold12	Augustus	exon	460066	460538	.	-	.	ID=Dca5236.1.exon5;Parent=Dca5236.1
scaffold12	Augustus	exon	461487	462140	.	-	.	ID=Dca5236.1.exon6;Parent=Dca5236.1