Carnation DB

Dca52487.1

Annotation

7-exons
f-1
sp|B9G5C7_ORYSJ#Putative uncharacterized protein#Oryza sativa subsp japonica (Rice)#ORFNames=OsJ_31232#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
sp|Q2QQV8_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g29700#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
Repeat List (scaffold692)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52487.1	4	955	1550	21.16	952	34	4e-145
Target_name	Start	End	Length	Cov(%)
sp\|B9G5C7_ORYSJ	633	1562	1594	58.34

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52487.1	968	1221	1550	5.61	254	34	3e-22
Target_name	Start	End	Length	Cov(%)
Os11t0569300-00	88	327	1072	22.38

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold692	Augustus	mRNA	46729	53642	.	+	.	ID=Dca52487.1;Parent=Dca52487
scaffold692	Augustus	exon	46729	46755	.	+	.	ID=Dca52487.1.exon1;Parent=Dca52487.1
scaffold692	Augustus	exon	47734	50588	.	+	.	ID=Dca52487.1.exon2;Parent=Dca52487.1
scaffold692	Augustus	exon	51108	51355	.	+	.	ID=Dca52487.1.exon3;Parent=Dca52487.1
scaffold692	Augustus	exon	51539	52174	.	+	.	ID=Dca52487.1.exon4;Parent=Dca52487.1
scaffold692	Augustus	exon	52304	52834	.	+	.	ID=Dca52487.1.exon5;Parent=Dca52487.1
scaffold692	Augustus	exon	53201	53548	.	+	.	ID=Dca52487.1.exon6;Parent=Dca52487.1
scaffold692	Augustus	exon	53635	53642	.	+	.	ID=Dca52487.1.exon7;Parent=Dca52487.1