Carnation DB

Dca5333.1

Annotation

7-exons
f-1
sp|F6GWC0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_05s0029g01070#unknown#0F0P0C
sp|G7JEW4_MEDTR#Ribosome biogenesis protein BMS1-like protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_4g068150#GO:0005634;GO:0042254#0F1P1C
Repeat List (scaffold1203)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5333.1	393	717	737	28.76	325	63	2e-115
Target_name	Start	End	Length	Cov(%)
sp\|F6GWC0_VITVI	111	421	472	65.88

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5333.1	393	714	737	26.59	322	59	8e-109
Target_name	Start	End	Length	Cov(%)
AT1G06720.1	792	1092	1147	26.24

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1203	Augustus	mRNA	28101	34255	.	-	.	ID=Dca5333.1;Parent=Dca5333
scaffold1203	Augustus	exon	28101	28166	.	-	.	ID=Dca5333.1.exon1;Parent=Dca5333.1
scaffold1203	Augustus	exon	29204	29437	.	-	.	ID=Dca5333.1.exon2;Parent=Dca5333.1
scaffold1203	Augustus	exon	29555	29865	.	-	.	ID=Dca5333.1.exon3;Parent=Dca5333.1
scaffold1203	Augustus	exon	31664	31877	.	-	.	ID=Dca5333.1.exon4;Parent=Dca5333.1
scaffold1203	Augustus	exon	32214	32461	.	-	.	ID=Dca5333.1.exon5;Parent=Dca5333.1
scaffold1203	Augustus	exon	32974	33868	.	-	.	ID=Dca5333.1.exon6;Parent=Dca5333.1
scaffold1203	Augustus	exon	34010	34255	.	-	.	ID=Dca5333.1.exon7;Parent=Dca5333.1