Dca53725.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold7226)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53725.1 |
38 |
163 |
164 |
55.48 |
126 |
73 |
4e-47
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
1471 |
1596 |
1597 |
7.88 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53725.1 |
38 |
141 |
164 |
26.21 |
104 |
42 |
3e-18
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os10t0432200-01 |
158 |
261 |
278 |
37.41 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7226 |
Augustus |
mRNA |
8685 |
9232 |
. |
+ |
. |
ID=Dca53725.1;Parent=Dca53725 |
| scaffold7226 |
Augustus |
exon |
8685 |
8801 |
. |
+ |
. |
ID=Dca53725.1.exon1;Parent=Dca53725.1 |
| scaffold7226 |
Augustus |
exon |
8855 |
9232 |
. |
+ |
. |
ID=Dca53725.1.exon2;Parent=Dca53725.1 |
