Carnation DB

Dca54228.1

Annotation

9-exons
f-1
sp|B9IHN3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_576137#GO:0005634;GO:0003677;GO:0006351#1F1P1C
AT5G05140.1 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436
Repeat List (scaffold737)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54228.1	1	402	402	56.96	402	51	6e-103
Target_name	Start	End	Length	Cov(%)
sp\|B9IHN3_POPTR	29	474	474	94.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54228.1	1	402	402	43.03	402	41	4e-73
Target_name	Start	End	Length	Cov(%)
AT5G05140.1	31	436	436	93.11

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold737	Augustus	mRNA	86777	89729	.	+	.	ID=Dca54228.1;Parent=Dca54228
scaffold737	Augustus	exon	86777	87190	.	+	.	ID=Dca54228.1.exon1;Parent=Dca54228.1
scaffold737	Augustus	exon	87786	87854	.	+	.	ID=Dca54228.1.exon2;Parent=Dca54228.1
scaffold737	Augustus	exon	87956	88038	.	+	.	ID=Dca54228.1.exon3;Parent=Dca54228.1
scaffold737	Augustus	exon	88398	88450	.	+	.	ID=Dca54228.1.exon4;Parent=Dca54228.1
scaffold737	Augustus	exon	88570	88685	.	+	.	ID=Dca54228.1.exon5;Parent=Dca54228.1
scaffold737	Augustus	exon	88787	88814	.	+	.	ID=Dca54228.1.exon6;Parent=Dca54228.1
scaffold737	Augustus	exon	88939	89168	.	+	.	ID=Dca54228.1.exon7;Parent=Dca54228.1
scaffold737	Augustus	exon	89397	89487	.	+	.	ID=Dca54228.1.exon8;Parent=Dca54228.1
scaffold737	Augustus	exon	89605	89729	.	+	.	ID=Dca54228.1.exon9;Parent=Dca54228.1