Carnation DB

Dca5452.1

Annotation

8-exons
f-1
sp|D7MB80_ARALL#Proteasome subunit beta type#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_328593#GO:0005737;GO:0005634;GO:0005839;GO:0004298;GO:0051603#1F1P3C
Repeat List (scaffold1209)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5452.1	4	234	236	83.05	231	85	2e-113
Target_name	Start	End	Length	Cov(%)
sp\|D7MB80_ARALL	3	232	234	98.29

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5452.1	4	234	236	82.2	231	84	4e-113
Target_name	Start	End	Length	Cov(%)
AT4G31300.2	3	232	234	98.29

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1209	Augus-PASA	mRNA	36317	40877	.	-	.	ID=Dca5452.1;Parent=Dca5452
scaffold1209	Augus-PASA	exon	36317	36454	.	-	.	ID=Dca5452.1.exon1;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	36553	36627	.	-	.	ID=Dca5452.1.exon2;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	36714	36787	.	-	.	ID=Dca5452.1.exon3;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	37128	37239	.	-	.	ID=Dca5452.1.exon4;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	37835	37907	.	-	.	ID=Dca5452.1.exon5;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	39126	39181	.	-	.	ID=Dca5452.1.exon6;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	40021	40097	.	-	.	ID=Dca5452.1.exon7;Parent=Dca5452.1
scaffold1209	Augus-PASA	exon	40772	40877	.	-	.	ID=Dca5452.1.exon8;Parent=Dca5452.1