Carnation DB

Dca5478.1

Annotation

11-exons
f-1
sp|F6GU20_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_06s0004g02600#GO:0005634;GO:0005524;GO:0003677;GO:0004386;GO:0008270#4F0P1C
sp|G7L3U2_MEDTR#Chromodomain-helicase-DNA-binding protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_7g101690#GO:0005634;GO:0005524;GO:0003677;GO:0004386;GO:0008270#4F0P1C
Repeat List (scaffold121)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5478.1	147	559	574	30.83	413	43	7e-83
Target_name	Start	End	Length	Cov(%)
sp\|F6GU20_VITVI	559	959	1120	35.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5478.1	130	520	574	27.52	391	40	8e-70
Target_name	Start	End	Length	Cov(%)
Os06t0102800-01	701	1087	1274	30.37

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold121	Augustus	mRNA	114106	121928	.	+	.	ID=Dca5478.1;Parent=Dca5478
scaffold121	Augustus	exon	114106	114163	.	+	.	ID=Dca5478.1.exon1;Parent=Dca5478.1
scaffold121	Augustus	exon	114388	114511	.	+	.	ID=Dca5478.1.exon2;Parent=Dca5478.1
scaffold121	Augustus	exon	114867	114942	.	+	.	ID=Dca5478.1.exon3;Parent=Dca5478.1
scaffold121	Augustus	exon	115676	115747	.	+	.	ID=Dca5478.1.exon4;Parent=Dca5478.1
scaffold121	Augustus	exon	116137	116403	.	+	.	ID=Dca5478.1.exon5;Parent=Dca5478.1
scaffold121	Augustus	exon	116754	116927	.	+	.	ID=Dca5478.1.exon6;Parent=Dca5478.1
scaffold121	Augustus	exon	117381	118332	.	+	.	ID=Dca5478.1.exon7;Parent=Dca5478.1
scaffold121	Augustus	exon	118414	119780	.	+	.	ID=Dca5478.1.exon8;Parent=Dca5478.1
scaffold121	Augustus	exon	120335	120694	.	+	.	ID=Dca5478.1.exon9;Parent=Dca5478.1
scaffold121	Augustus	exon	120842	121046	.	+	.	ID=Dca5478.1.exon10;Parent=Dca5478.1
scaffold121	Augustus	exon	121555	121928	.	+	.	ID=Dca5478.1.exon11;Parent=Dca5478.1