Dca54910.1
Annotation
- 2-exons
- f-1
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold7576)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54910.1 |
46 |
155 |
167 |
42.51 |
110 |
65 |
7e-34
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RBA0_ORYSJ |
694 |
803 |
978 |
11.24 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54910.1 |
51 |
155 |
167 |
33.53 |
105 |
53 |
1e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00810.1 |
2 |
105 |
240 |
43.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7576 |
Augustus |
mRNA |
4517 |
5103 |
. |
+ |
. |
ID=Dca54910.1;Parent=Dca54910 |
| scaffold7576 |
Augustus |
exon |
4517 |
4652 |
. |
+ |
. |
ID=Dca54910.1.exon1;Parent=Dca54910.1 |
| scaffold7576 |
Augustus |
exon |
4736 |
5103 |
. |
+ |
. |
ID=Dca54910.1.exon2;Parent=Dca54910.1 |
