Carnation DB

Dca5494.1

Annotation

9-exons
f-1
sp|D7UAJ8_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_19s0015g00780#GO:0003677;GO:0003899;GO:0046983#3F0P0C
sp|B9S9W7_RICCO#DNA-directed RNA polymerase I/III subunits, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0523110#GO:0003677;GO:0003899;GO:0046983#3F0P0C
Repeat List (scaffold121)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5494.1	3	357	357	72.54	355	73	3e-145
Target_name	Start	End	Length	Cov(%)
sp\|D7UAJ8_VITVI	16	372	372	95.96

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5494.1	3	357	357	64.14	355	64	2e-129
Target_name	Start	End	Length	Cov(%)
Os03t0295400-01	23	379	380	93.94

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold121	Augus-PASA	mRNA	258647	263312	.	-	.	ID=Dca5494.1;Parent=Dca5494
scaffold121	Augus-PASA	exon	258647	258750	.	-	.	ID=Dca5494.1.exon1;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	260274	260387	.	-	.	ID=Dca5494.1.exon2;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	260919	261012	.	-	.	ID=Dca5494.1.exon3;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	261126	261221	.	-	.	ID=Dca5494.1.exon4;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	261534	261733	.	-	.	ID=Dca5494.1.exon5;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	261847	261927	.	-	.	ID=Dca5494.1.exon6;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	262032	262161	.	-	.	ID=Dca5494.1.exon7;Parent=Dca5494.1
scaffold121	Augus-PASA	exon	262971	263153	.	-	.	ID=Dca5494.1.exon8;Parent=Dca5494.1
scaffold121	Augustus	exon	263241	263312	.	-	.	ID=Dca5494.1.exon9;Parent=Dca5494.1