Dca55384.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold7701)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55384.1 |
6 |
405 |
413 |
40.67 |
400 |
39 |
5e-78
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
142 |
553 |
1248 |
33.01 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55384.1 |
252 |
407 |
413 |
14.52 |
156 |
38 |
1e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
648 |
1428 |
11.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7701 |
Augustus |
mRNA |
9833 |
11445 |
. |
- |
. |
ID=Dca55384.1;Parent=Dca55384 |
| scaffold7701 |
Augustus |
exon |
9833 |
10404 |
. |
- |
. |
ID=Dca55384.1.exon1;Parent=Dca55384.1 |
| scaffold7701 |
Augustus |
exon |
10776 |
11445 |
. |
- |
. |
ID=Dca55384.1.exon2;Parent=Dca55384.1 |
