Carnation DB

Dca55499.1

Annotation

6-exons
f-109
sp|Q9FL83_ARATH#Non-LTR retroelement reverse transcriptase-like protein#Arabidopsis thaliana (Mouse-ear cress)#unknown#GO:0003723;GO:0003964;GO:0006278#2F1P0C
Repeat List (scaffold7737)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55499.1	323	554	568	17.25	232	43	9e-40
Target_name	Start	End	Length	Cov(%)
sp\|Q9FL83_ARATH	400	609	1223	17.17

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55499.1	352	555	568	11.61	204	33	9e-26
Target_name	Start	End	Length	Cov(%)
Os06t0484800-00	308	506	857	23.22

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7737	Augustus	mRNA	2562	5952	.	+	.	ID=Dca55499.1;Parent=Dca55499
scaffold7737	Augustus	exon	2562	2702	.	+	.	ID=Dca55499.1.exon1;Parent=Dca55499.1
scaffold7737	Augustus	exon	3525	3821	.	+	.	ID=Dca55499.1.exon2;Parent=Dca55499.1
scaffold7737	Augustus	exon	3884	4110	.	+	.	ID=Dca55499.1.exon3;Parent=Dca55499.1
scaffold7737	Augustus	exon	4288	4462	.	+	.	ID=Dca55499.1.exon4;Parent=Dca55499.1
scaffold7737	Augustus	exon	4946	5149	.	+	.	ID=Dca55499.1.exon5;Parent=Dca55499.1
scaffold7737	Augustus	exon	5290	5952	.	+	.	ID=Dca55499.1.exon6;Parent=Dca55499.1