Dca55723.1
Annotation
- 3-exons
- f-1
- sp|E9NZT4_PHAVU#Putative uncharacterized protein#Phaseolus vulgaris (Kidney bean) (French bean)#unknown#unknown#0F0P0C
- AT4G03180.1 | Symbols: | CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). | chr4:1403289-1404663 FORWARD LENGTH=185
- Repeat List (scaffold78)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55723.1 |
23 |
186 |
186 |
51.61 |
164 |
58 |
6e-39
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E9NZT4_PHAVU |
16 |
180 |
187 |
88.23 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55723.1 |
25 |
185 |
186 |
44.08 |
161 |
50 |
1e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G03180.1 |
23 |
179 |
185 |
84.86 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold78 |
Augustus |
mRNA |
187505 |
189327 |
. |
+ |
. |
ID=Dca55723.1;Parent=Dca55723 |
| scaffold78 |
Augustus |
exon |
187505 |
187679 |
. |
+ |
. |
ID=Dca55723.1.exon1;Parent=Dca55723.1 |
| scaffold78 |
Augus-PASA |
exon |
188857 |
188960 |
. |
+ |
. |
ID=Dca55723.1.exon2;Parent=Dca55723.1 |
| scaffold78 |
Augus-PASA |
exon |
189046 |
189327 |
. |
+ |
. |
ID=Dca55723.1.exon3;Parent=Dca55723.1 |
