Carnation DB

Dca55746.1

Annotation

5-exons
f-1
sp|Q9C6L3_ARATH#Putative uncharacterized protein F2J7.11#Arabidopsis thaliana (Mouse-ear cress)#Name=F2J7.11#GO:0003723;GO:0003964;GO:0006278#2F1P0C
sp|O81068_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g28980#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
Repeat List (scaffold780)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55746.1	601	736	765	5.75	136	31	1e-08
Target_name	Start	End	Length	Cov(%)
sp\|Q9C6L3_ARATH	1050	1188	1213	11.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55746.1	154	455	765	13.46	302	34	5e-45
Target_name	Start	End	Length	Cov(%)
Os06t0484800-00	238	531	857	34.3

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold780	Augustus	mRNA	2906	6055	.	+	.	ID=Dca55746.1;Parent=Dca55746
scaffold780	Augustus	exon	2906	3332	.	+	.	ID=Dca55746.1.exon1;Parent=Dca55746.1
scaffold780	Augustus	exon	3452	3515	.	+	.	ID=Dca55746.1.exon2;Parent=Dca55746.1
scaffold780	Augustus	exon	3671	4549	.	+	.	ID=Dca55746.1.exon3;Parent=Dca55746.1
scaffold780	Augustus	exon	4666	5006	.	+	.	ID=Dca55746.1.exon4;Parent=Dca55746.1
scaffold780	Augustus	exon	5469	6055	.	+	.	ID=Dca55746.1.exon5;Parent=Dca55746.1