Dca56660.1
Annotation
- 3-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8023)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56660.1 |
1 |
568 |
595 |
46.55 |
568 |
48 |
2e-138
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
219 |
766 |
767 |
71.44 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56660.1 |
370 |
574 |
595 |
11.59 |
205 |
34 |
1e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1203 |
1405 |
1428 |
14.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8023 |
Augustus |
mRNA |
8865 |
12569 |
. |
- |
. |
ID=Dca56660.1;Parent=Dca56660 |
| scaffold8023 |
Augustus |
exon |
8865 |
9635 |
. |
- |
. |
ID=Dca56660.1.exon1;Parent=Dca56660.1 |
| scaffold8023 |
Augustus |
exon |
10975 |
11531 |
. |
- |
. |
ID=Dca56660.1.exon2;Parent=Dca56660.1 |
| scaffold8023 |
Augustus |
exon |
12110 |
12569 |
. |
- |
. |
ID=Dca56660.1.exon3;Parent=Dca56660.1 |
