Dca56719.1
Annotation
- 3-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8048)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56719.1 |
9 |
528 |
528 |
41.28 |
520 |
40 |
6e-109
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
84 |
616 |
1248 |
42.7 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56719.1 |
312 |
527 |
528 |
17.42 |
216 |
42 |
7e-47
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
709 |
1428 |
15.4 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8048 |
Augustus |
mRNA |
12515 |
14468 |
. |
+ |
. |
ID=Dca56719.1;Parent=Dca56719 |
| scaffold8048 |
Augustus |
exon |
12515 |
13046 |
. |
+ |
. |
ID=Dca56719.1.exon1;Parent=Dca56719.1 |
| scaffold8048 |
Augustus |
exon |
13181 |
13498 |
. |
+ |
. |
ID=Dca56719.1.exon2;Parent=Dca56719.1 |
| scaffold8048 |
Augustus |
exon |
13732 |
14468 |
. |
+ |
. |
ID=Dca56719.1.exon3;Parent=Dca56719.1 |
