Carnation DB

Dca5677.1

Annotation

5-exons
f-1
sp|Q8L5S3_9CARY#Expansin 11#Rumex palustris#Name=EXP11#GO:0005576;GO:0016020;GO:0009664#0F1P2C
Repeat List (scaffold122)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5677.1	10	209	417	41.72	200	85	2e-100
Target_name	Start	End	Length	Cov(%)
sp\|Q8L5S3_9CARY	1	206	258	79.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5677.1	7	209	417	38.6	203	80	2e-94
Target_name	Start	End	Length	Cov(%)
AT2G39700.1	3	205	257	78.98

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold122	Augus-PASA	mRNA	85981	91503	.	+	.	ID=Dca5677.1;Parent=Dca5677
scaffold122	Augus-PASA	exon	85981	86137	.	+	.	ID=Dca5677.1.exon1;Parent=Dca5677.1
scaffold122	Augus-PASA	exon	86820	87138	.	+	.	ID=Dca5677.1.exon2;Parent=Dca5677.1
scaffold122	Augustus	exon	88191	88339	.	+	.	ID=Dca5677.1.exon3;Parent=Dca5677.1
scaffold122	Augustus	exon	90010	90328	.	+	.	ID=Dca5677.1.exon4;Parent=Dca5677.1
scaffold122	Augus-PASA	exon	91194	91503	.	+	.	ID=Dca5677.1.exon5;Parent=Dca5677.1