Carnation DB

Dca5703.1

Annotation

5-exons
f-1
sp|B9HPK6_POPTR#Methyl binding domain protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=MBD906#GO:0005634;GO:0003677#1F0P1C
Repeat List (scaffold122)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5703.1	23	168	179	29.6	146	36	5e-20
Target_name	Start	End	Length	Cov(%)
sp\|B9HPK6_POPTR	90	236	236	62.28

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5703.1	17	90	179	16.2	74	40	4e-08
Target_name	Start	End	Length	Cov(%)
AT5G59800.1	100	172	306	23.85

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold122	Augustus	mRNA	279569	281025	.	+	.	ID=Dca5703.1;Parent=Dca5703
scaffold122	Augustus	exon	279569	279580	.	+	.	ID=Dca5703.1.exon1;Parent=Dca5703.1
scaffold122	Augustus	exon	279901	280047	.	+	.	ID=Dca5703.1.exon2;Parent=Dca5703.1
scaffold122	Augustus	exon	280453	280572	.	+	.	ID=Dca5703.1.exon3;Parent=Dca5703.1
scaffold122	Augustus	exon	280671	280901	.	+	.	ID=Dca5703.1.exon4;Parent=Dca5703.1
scaffold122	Augustus	exon	280996	281025	.	+	.	ID=Dca5703.1.exon5;Parent=Dca5703.1