Carnation DB

Dca5726.1

Annotation

6-exons
f-1
sp|B9RTK8_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0911130#unknown#0F0P0C
AT4G14746.1 | Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212
Repeat List (scaffold1220)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5726.1	7	202	222	43.24	196	49	1e-48
Target_name	Start	End	Length	Cov(%)
sp\|B9RTK8_RICCO	2	193	240	80

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5726.1	14	215	222	40.54	202	44	5e-38
Target_name	Start	End	Length	Cov(%)
AT4G14746.1	10	204	212	91.98

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1220	Augustus	mRNA	44148	46234	.	-	.	ID=Dca5726.1;Parent=Dca5726
scaffold1220	Augustus	exon	44148	44224	.	-	.	ID=Dca5726.1.exon1;Parent=Dca5726.1
scaffold1220	Augustus	exon	44341	44445	.	-	.	ID=Dca5726.1.exon2;Parent=Dca5726.1
scaffold1220	Augustus	exon	44697	44822	.	-	.	ID=Dca5726.1.exon3;Parent=Dca5726.1
scaffold1220	Augustus	exon	44916	44996	.	-	.	ID=Dca5726.1.exon4;Parent=Dca5726.1
scaffold1220	Augustus	exon	45711	45866	.	-	.	ID=Dca5726.1.exon5;Parent=Dca5726.1
scaffold1220	Augustus	exon	46111	46234	.	-	.	ID=Dca5726.1.exon6;Parent=Dca5726.1