Carnation DB

Dca57848.1

Annotation

13-exons
f-1
sp|F6H0C9_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g00500#GO:0009982;GO:0003723;GO:0001522#2F1P0C
AT1G20410.1 | Symbols: | Pseudouridine synthase family protein | chr1:7079049-7082504 REVERSE LENGTH=504
Repeat List (scaffold84)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca57848.1	28	207	453	18.76	180	44	6e-40
Target_name	Start	End	Length	Cov(%)
sp\|F6H0C9_VITVI	34	228	578	33.73

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca57848.1	31	207	453	15.01	177	39	2e-23
Target_name	Start	End	Length	Cov(%)
AT1G20410.1	28	197	504	33.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold84	Augustus	mRNA	157182	163917	.	+	.	ID=Dca57848.1;Parent=Dca57848
scaffold84	Augustus	exon	157182	157337	.	+	.	ID=Dca57848.1.exon1;Parent=Dca57848.1
scaffold84	Augustus	exon	157935	158278	.	+	.	ID=Dca57848.1.exon2;Parent=Dca57848.1
scaffold84	Augustus	exon	158457	158577	.	+	.	ID=Dca57848.1.exon3;Parent=Dca57848.1
scaffold84	Augustus	exon	160850	160918	.	+	.	ID=Dca57848.1.exon4;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	161009	161089	.	+	.	ID=Dca57848.1.exon5;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	161170	161289	.	+	.	ID=Dca57848.1.exon6;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	161396	161470	.	+	.	ID=Dca57848.1.exon7;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	161550	161630	.	+	.	ID=Dca57848.1.exon8;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	162113	162186	.	+	.	ID=Dca57848.1.exon9;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	162280	162340	.	+	.	ID=Dca57848.1.exon10;Parent=Dca57848.1
scaffold84	Augus-PASA	exon	162979	163034	.	+	.	ID=Dca57848.1.exon11;Parent=Dca57848.1
scaffold84	Augustus	exon	163643	163719	.	+	.	ID=Dca57848.1.exon12;Parent=Dca57848.1
scaffold84	Augustus	exon	163871	163917	.	+	.	ID=Dca57848.1.exon13;Parent=Dca57848.1