Dca58335.1
Annotation
- 4-exons
- f-1
- sp|F4NCG3_BETVU#Putative uncharacterized protein#Beta vulgaris subsp vulgaris#unknown#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- sp|Q9ZUF0_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g05980#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold855)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58335.1 |
19 |
807 |
831 |
34.53 |
789 |
33 |
1e-132
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F4NCG3_BETVU |
103 |
996 |
1114 |
80.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58335.1 |
305 |
753 |
831 |
16.6 |
449 |
30 |
1e-57
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
401 |
856 |
857 |
53.2 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold855 |
Augustus |
mRNA |
31449 |
34411 |
. |
- |
. |
ID=Dca58335.1;Parent=Dca58335 |
| scaffold855 |
Augustus |
exon |
31449 |
31526 |
. |
- |
. |
ID=Dca58335.1.exon1;Parent=Dca58335.1 |
| scaffold855 |
Augustus |
exon |
31688 |
33184 |
. |
- |
. |
ID=Dca58335.1.exon2;Parent=Dca58335.1 |
| scaffold855 |
Augustus |
exon |
33407 |
33708 |
. |
- |
. |
ID=Dca58335.1.exon3;Parent=Dca58335.1 |
| scaffold855 |
Augustus |
exon |
33793 |
34411 |
. |
- |
. |
ID=Dca58335.1.exon4;Parent=Dca58335.1 |
