Dca58352.1
Annotation
- 2-exons
- f-1
- sp|Q53J94_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g22600#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold8554)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58352.1 |
331 |
611 |
611 |
21.6 |
281 |
47 |
1e-73
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53J94_ORYSJ |
308 |
573 |
591 |
45 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58352.1 |
453 |
611 |
611 |
11.78 |
159 |
46 |
6e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
902 |
1057 |
1428 |
10.92 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8554 |
Augustus |
mRNA |
5155 |
8683 |
. |
- |
. |
ID=Dca58352.1;Parent=Dca58352 |
| scaffold8554 |
Augustus |
exon |
5155 |
5783 |
. |
- |
. |
ID=Dca58352.1.exon1;Parent=Dca58352.1 |
| scaffold8554 |
Augustus |
exon |
7477 |
8683 |
. |
- |
. |
ID=Dca58352.1.exon2;Parent=Dca58352.1 |
