Dca58788.1
Annotation
- 4-exons
- f-1
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8674)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58788.1 |
367 |
416 |
598 |
4.51 |
50 |
54 |
9e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1086 |
1135 |
1745 |
2.86 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca58788.1 |
469 |
595 |
598 |
9.03 |
127 |
43 |
1e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
902 |
1025 |
1428 |
8.68 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8674 |
Augustus |
mRNA |
211 |
3901 |
. |
+ |
. |
ID=Dca58788.1;Parent=Dca58788 |
| scaffold8674 |
Augustus |
exon |
211 |
384 |
. |
+ |
. |
ID=Dca58788.1.exon1;Parent=Dca58788.1 |
| scaffold8674 |
Augustus |
exon |
1950 |
2588 |
. |
+ |
. |
ID=Dca58788.1.exon2;Parent=Dca58788.1 |
| scaffold8674 |
Augustus |
exon |
2812 |
3245 |
. |
+ |
. |
ID=Dca58788.1.exon3;Parent=Dca58788.1 |
| scaffold8674 |
Augustus |
exon |
3352 |
3901 |
. |
+ |
. |
ID=Dca58788.1.exon4;Parent=Dca58788.1 |
