Carnation DB

Dca59178.1

Annotation

6-exons
f-382
sp|B9IBG3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_824462#unknown#0F0P0C
AT5G42765.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17150505-17151641 REVERSE LENGTH=229
Repeat List (scaffold88)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca59178.1	1	114	114	64.91	114	65	1e-37
Target_name	Start	End	Length	Cov(%)
sp\|B9IBG3_POPTR	108	221	221	51.58

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca59178.1	1	113	114	57.01	113	58	7e-32
Target_name	Start	End	Length	Cov(%)
AT5G42765.1	116	228	229	49.34

seqname	source	feature	start	end	score	strand	frame	group
scaffold88	Augustus	mRNA	232714	235007	.	-	.	ID=Dca59178.1;Parent=Dca59178
scaffold88	Augustus	exon	232714	232798	.	-	.	ID=Dca59178.1.exon1;Parent=Dca59178.1
scaffold88	Augustus	exon	233132	233191	.	-	.	ID=Dca59178.1.exon2;Parent=Dca59178.1
scaffold88	Augustus	exon	233524	233624	.	-	.	ID=Dca59178.1.exon3;Parent=Dca59178.1
scaffold88	Augustus	exon	234277	234407	.	-	.	ID=Dca59178.1.exon4;Parent=Dca59178.1
scaffold88	Augustus	exon	234514	234618	.	-	.	ID=Dca59178.1.exon5;Parent=Dca59178.1
scaffold88	Augustus	exon	234764	235007	.	-	.	ID=Dca59178.1.exon6;Parent=Dca59178.1