Dca59337.1
Annotation
- 3-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold8847)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59337.1 |
36 |
402 |
403 |
29.77 |
367 |
33 |
4e-44
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
111 |
427 |
767 |
41.32 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59337.1 |
331 |
402 |
403 |
7.94 |
72 |
45 |
2e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os02t0671800-01 |
452 |
522 |
573 |
12.39 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8847 |
Augustus |
mRNA |
9942 |
11701 |
. |
+ |
. |
ID=Dca59337.1;Parent=Dca59337 |
| scaffold8847 |
Augustus |
exon |
9942 |
10857 |
. |
+ |
. |
ID=Dca59337.1.exon1;Parent=Dca59337.1 |
| scaffold8847 |
Augustus |
exon |
10959 |
10989 |
. |
+ |
. |
ID=Dca59337.1.exon2;Parent=Dca59337.1 |
| scaffold8847 |
Augustus |
exon |
11437 |
11701 |
. |
+ |
. |
ID=Dca59337.1.exon3;Parent=Dca59337.1 |
