Dca59523.1
Annotation
- 4-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold8900)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59523.1 |
104 |
391 |
391 |
40.66 |
288 |
49 |
2e-84
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
222 |
549 |
964 |
34.02 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca59523.1 |
271 |
391 |
391 |
12.27 |
121 |
40 |
4e-20
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
902 |
1019 |
1428 |
8.26 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold8900 |
Augustus |
mRNA |
6511 |
8812 |
. |
+ |
. |
ID=Dca59523.1;Parent=Dca59523 |
| scaffold8900 |
Augustus |
exon |
6511 |
6810 |
. |
+ |
. |
ID=Dca59523.1.exon1;Parent=Dca59523.1 |
| scaffold8900 |
Augustus |
exon |
7721 |
8043 |
. |
+ |
. |
ID=Dca59523.1.exon2;Parent=Dca59523.1 |
| scaffold8900 |
Augustus |
exon |
8142 |
8279 |
. |
+ |
. |
ID=Dca59523.1.exon3;Parent=Dca59523.1 |
| scaffold8900 |
Augustus |
exon |
8398 |
8812 |
. |
+ |
. |
ID=Dca59523.1.exon4;Parent=Dca59523.1 |
