Carnation DB

Dca6000.1

Annotation

5-exons
f-1
sp|B9HIY7_POPTR#NAC domain protein, IPR003441#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=NAC155#GO:0003677;GO:0006355#1F1P0C
Repeat List (scaffold12325)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6000.1	14	385	387	55.55	372	57	2e-117
Target_name	Start	End	Length	Cov(%)
sp\|B9HIY7_POPTR	50	428	428	88.55

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca6000.1	14	384	387	50.9	371	49	1e-99
Target_name	Start	End	Length	Cov(%)
AT1G25580.1	51	449	449	88.86

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12325	Augus-PASA	mRNA	557	3745	.	-	.	ID=Dca6000.1;Parent=Dca6000
scaffold12325	Augus-PASA	exon	557	619	.	-	.	ID=Dca6000.1.exon1;Parent=Dca6000.1
scaffold12325	Augus-PASA	exon	713	1096	.	-	.	ID=Dca6000.1.exon2;Parent=Dca6000.1
scaffold12325	Augus-PASA	exon	1738	2228	.	-	.	ID=Dca6000.1.exon3;Parent=Dca6000.1
scaffold12325	Augus-PASA	exon	2318	2504	.	-	.	ID=Dca6000.1.exon4;Parent=Dca6000.1
scaffold12325	Augustus	exon	3707	3745	.	-	.	ID=Dca6000.1.exon5;Parent=Dca6000.1