Carnation DB

Dca60649.1

Annotation

6-exons
f-1
sp|B9I0J7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1094681#unknown#0F0P0C
AT1G79090.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29749551-29752945 REVERSE LENGTH=793
Repeat List (scaffold929)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60649.1	3	763	833	52.22	761	55	0
Target_name	Start	End	Length	Cov(%)
sp\|B9I0J7_POPTR	5	796	804	98.5

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca60649.1	8	754	833	48.85	747	53	0
Target_name	Start	End	Length	Cov(%)
AT1G79090.1	20	782	793	96.21

seqname	source	feature	start	end	score	strand	frame	group
scaffold929	Augustus	mRNA	69580	76825	.	-	.	ID=Dca60649.1;Parent=Dca60649
scaffold929	Augustus	exon	69580	69782	.	-	.	ID=Dca60649.1.exon1;Parent=Dca60649.1
scaffold929	Augustus	exon	69881	71875	.	-	.	ID=Dca60649.1.exon2;Parent=Dca60649.1
scaffold929	Augustus	exon	72453	72516	.	-	.	ID=Dca60649.1.exon3;Parent=Dca60649.1
scaffold929	Augustus	exon	73362	73418	.	-	.	ID=Dca60649.1.exon4;Parent=Dca60649.1
scaffold929	Augustus	exon	75535	75671	.	-	.	ID=Dca60649.1.exon5;Parent=Dca60649.1
scaffold929	Augustus	exon	76780	76825	.	-	.	ID=Dca60649.1.exon6;Parent=Dca60649.1