Dca62045.1
Annotation
- 3-exons
- f-1
- sp|Q2QLK1_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g44200#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold978)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62045.1 |
54 |
311 |
311 |
49.83 |
258 |
61 |
6e-83
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QLK1_ORYSJ |
698 |
944 |
1198 |
20.61 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62045.1 |
80 |
310 |
311 |
36.33 |
231 |
49 |
5e-64
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
920 |
1149 |
1428 |
16.1 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold978 |
Augustus |
mRNA |
48884 |
50684 |
. |
- |
. |
ID=Dca62045.1;Parent=Dca62045 |
| scaffold978 |
Augustus |
exon |
48884 |
49581 |
. |
- |
. |
ID=Dca62045.1.exon1;Parent=Dca62045.1 |
| scaffold978 |
Augustus |
exon |
49699 |
49875 |
. |
- |
. |
ID=Dca62045.1.exon2;Parent=Dca62045.1 |
| scaffold978 |
Augustus |
exon |
50624 |
50684 |
. |
- |
. |
ID=Dca62045.1.exon3;Parent=Dca62045.1 |
