Dca62166.1
Annotation
- 3-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold9814)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62166.1 |
2 |
261 |
263 |
46.76 |
260 |
40 |
3e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
172 |
480 |
932 |
33.15 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62166.1 |
16 |
106 |
263 |
12.92 |
91 |
36 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
492 |
587 |
1428 |
6.72 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold9814 |
Augustus |
mRNA |
17065 |
18206 |
. |
- |
. |
ID=Dca62166.1;Parent=Dca62166 |
| scaffold9814 |
Augustus |
exon |
17065 |
17332 |
. |
- |
. |
ID=Dca62166.1.exon1;Parent=Dca62166.1 |
| scaffold9814 |
Augustus |
exon |
17422 |
17661 |
. |
- |
. |
ID=Dca62166.1.exon2;Parent=Dca62166.1 |
| scaffold9814 |
Augustus |
exon |
17923 |
18206 |
. |
- |
. |
ID=Dca62166.1.exon3;Parent=Dca62166.1 |
