Dca62230.1
Annotation
- 3-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold9841)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62230.1 |
56 |
457 |
457 |
36.76 |
402 |
37 |
2e-66
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
163 |
602 |
1248 |
35.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca62230.1 |
320 |
457 |
457 |
12.25 |
138 |
41 |
7e-26
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
558 |
695 |
1428 |
9.66 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold9841 |
Augustus |
mRNA |
74 |
2057 |
. |
- |
. |
ID=Dca62230.1;Parent=Dca62230 |
| scaffold9841 |
Augustus |
exon |
74 |
500 |
. |
- |
. |
ID=Dca62230.1.exon1;Parent=Dca62230.1 |
| scaffold9841 |
Augustus |
exon |
947 |
1731 |
. |
- |
. |
ID=Dca62230.1.exon2;Parent=Dca62230.1 |
| scaffold9841 |
Augustus |
exon |
1896 |
2057 |
. |
- |
. |
ID=Dca62230.1.exon3;Parent=Dca62230.1 |
